PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10030209m
Common NameCICLE_v10030209mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 194aa    MW: 21488.7 Da    PI: 5.3797
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10030209mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.000353254123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y C+ C++ Fs+   L  H++ H
  Ciclev10030209m 32 YDCTFCKRGFSNAQALGGHMNIH 54
                     88*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.55E-63059No hitNo description
Gene3DG3DSA:3.30.160.609.6E-53058IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.3443259IPR007087Zinc finger, C2H2
PROSITE patternPS0002803454IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
METDHDPPSQ ENQEQETSDD QQRAAASPIR SYDCTFCKRG FSNAQALGGH MNIHRKDKAK  60
LKQAASSNNL YQQSFDISKI RASYSQISTI RPSMEVMSNS QDRSIATQRP NWILGAENDA  120
MKTEKTQVGD VRKLSLFVEG SSPLKIDQRE ATSTEKGLLS SSSEEEDLDL ELRLGPEPRP  180
DSSTPATGTK KFF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006424902.11e-143hypothetical protein CICLE_v10030209mg
TrEMBLV4SCC31e-143V4SCC3_9R
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69912341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.13e-17C2H2 family protein